Breeding programmes are key to the genetic improvement of plant varieties and animal breeds used in agriculture. This unique course shows how to model an existing or new breeding programme and the evaluation of alternative breeding scenarios.
This online course will equip participants with an understanding of computer modelling of breeding programmes to enhance genetic improvements in agriculture. The modelling is done through the AlphaSimR package.
The package provides a set of functions that represent breeding activities. The combination of these functions in an R script allows the modelling of simple and arbitrarily complex breeding programmes. It also allows evaluation of the effects of alternative breeding scenarios on the rate of genetic improvement and other key performance indicators.
The course is taught by experts in the field and is applicable to a range of breeding programmes as demonstrated through local and global case studies.
What's included
5 readings2 discussion prompts
Show info about module content
5 readings•Total 8 minutes
Welcome to the Course!•1 minute
Meet the Team•2 minutes
Course Structure•3 minutes
Certification•1 minute
Upgrade to Continue Your Journey!•1 minute
2 discussion prompts•Total 30 minutes
Getting Help•10 minutes
Your Learning Community•20 minutes
Week 1 - Introduction to breeding programme modelling
Module 2•1 hour to complete
Module details
What's included
2 videos6 readings
Show info about module content
2 videos•Total 11 minutes
The Big Question - Video•5 minutes
Interview with Giovanny Eduardo Covarrubias Pazaran from EiB •6 minutes
6 readings•Total 61 minutes
The Big Question•10 minutes
CGIAR's Excellence in Breeding (EiB)•10 minutes
Introducing AlphaSimR•10 minutes
Accessing Reading and Coding Activities•1 minute
Software setup - Optional•20 minutes
Glossary•10 minutes
Week 2 - Relationship between DNA & Traits
Module 3•7 hours to complete
Module details
What's included
5 videos7 readings1 assignment5 ungraded labs
Show info about module content
5 videos•Total 54 minutes
Trait to DNA Video•9 minutes
Simulating DNA in AlphaSimR Video•17 minutes
Simulating Traits in AlphaSimR Video - Part 1•11 minutes
Simulating traits in AlphaSimR Video - Part 2•10 minutes
Serap Gonen Interview•7 minutes
7 readings•Total 20 minutes
Relationship between traits and DNA•10 minutes
Simulating DNA in AlphaSimR•1 minute
Exercise introduction•1 minute
Simulating Traits in AlphaSimR•1 minute
Exercise introduction•1 minute
Independent exercise introduction•1 minute
Interview with Serap Gonen from MOWI•5 minutes
1 assignment•Total 30 minutes
Week 2 Quiz•30 minutes
5 ungraded labs•Total 300 minutes
Simulating DNA in AlphaSimR - Reading R Notebook•60 minutes
Simulating DNA in AlphaSimR Exercise•60 minutes
Simulating traits in AlphaSimR - Reading R Notebook•60 minutes
Simulating traits in AlphaSimR Exercise•60 minutes
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Is financial aid available?
Yes. In select learning programs, you can apply for financial aid or a scholarship if you can’t afford the enrollment fee. If fin aid or scholarship is available for your learning program selection, you’ll find a link to apply on the description page.